Keep one manuscript, but change the view and the tool depending on the editing pass.
Start with structure before sentences
For a large rewrite, the important question is often not whether one sentence is elegant. It is whether a chapter belongs here, whether a scene arrives too early, whether a plotline disappears for fifty pages, or whether the point of view remains coherent.
B-Maker keeps chapters, scenes, characters, plotlines, POV and the manuscript board connected to the same project, so structural revision does not require maintaining a second spreadsheet beside the novel.

Use versions for risky rewrites
If a chapter needs a major rewrite, create another version instead of destroying the previous state. Compare the two revisions, choose the current one, and lock a checkpoint when a version becomes important.
This makes experimentation cheaper. You can cut a subplot, try a different opening, or accept an AI-assisted revision without turning undo history into your only safety mechanism.

Read the novel continuously
Chapter files are convenient while writing. They can hide pacing problems during editing. A continuous manuscript view helps reveal transitions, repeated explanations, uneven chapter rhythm and the accumulated effect of small stylistic habits.
Add mechanical checks near the end
Editorial checks are most useful when they do not pretend to judge literature. Long sentences, long paragraphs, repetition, draft markers, missing story links and project inconsistencies are useful signals precisely because the author still decides what matters.
Listen to the manuscript as another pass
Auditory editing changes the channel. Read-aloud can expose rhythm problems and awkward repetition that visual familiarity hides. B-Maker can read a section, selection, text from the cursor or a branch and can create MP3 files with downloaded voices for a listening pass away from the desk.
What to look for in novel editing software
Look for version comparison, whole-manuscript reading, project-aware story context, comments, mechanical checks, flexible views and a safe way to experiment. The important feature is not any one button. It is whether the manuscript remains one source of truth while the editing method changes.
Related B-Maker material
Story: no more final-final.docx · Read the whole manuscript · Listen before you publish · Why editorial checks exist